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252. |
Tian, F., M. DeMarco, R. Woods, and J.H. Prestegard. 2009 Presentation of membrane-anchored glycosphingolipids
determined from molecular dynamics simulations and NMR paramagnetic relaxation rate enhancement.
J. Am. Chem. Soc. (in press). |
251. |
Liu, S., L. Meng, K.W. Moremen, and J.H. Prestegard. 2009 Nuclear magnetic resonance structural characterization
of substrates bound to the α-2, 6-sialyltransferase, ST6Gal-1. Biochemistry 48(47):11211-11219.
doi: 10.1021/bi9015154. PMCID:
PMC2790006. |
250. |
Barb, A.W., E.K. Brady, and J.H. Prestegard. 2009 Branch-specific sialylation of IgG-Fc glycans by ST6Gal-1.
Biochemistry 48(41): 9705-9707. doi: 10.1021/bi901430h.
PMCID: PMC2761508. |
249. |
Liu, Y. and J.H. Prestegard. 2009 Measurement of one and two bond N-C couplings in large proteins by
TROSY-based J-modulation experiments. J. Magn. Reson. 200(1):109-118.
doi: 10.1016/j.jmr.2009.06.010. PMCID:
PMC2763284. |
248. |
Nkari, W.K, and J.H. Prestegard. 2009 NMR resonance assignments of sparsely labeled proteins: amide proton
exchange correlations in native and denatured states. J. Am. Chem. Soc. 131(14): 5344-5349.
doi: 10.1021/ja8100775. PMCID:
PMC2699400. |
247. |
Liu, Y., R.A. Kahn, and J.H. Prestegard. 2009 Structure and membrane interaction of myristoylated ARF1.
Structure 17(1): 79-87. doi: 10.1016/j.str.2008.10.020.
PMCID: PMC2659477. |
246. |
Montelione, G.T., C. Arrowsmith, M.E. Girvin, M.A. Kennedy, J.L. Markley, R. Powers, J.H. Prestegard, and T. Szyperski.
2009 Unique opportunities for NMR methods in structural genomics. J. Struct. Funct. Genomics
10(2):101-106. doi: 10.1007/s10969-009-9064-0. PMCID:
PMC2705713. |
245. |
Kley, S., M. Hoenig, J. Glushka, E.S. Jin, S.C. Burgess, M. Waldron, E.T. Jordan, J.H. Prestegard, D.C. Ferguson,
S. Wu, and D.E. Olson. 2009 The impact of obesity, sex, and diet on hepatic glucose production in cats.
Am. J. Physiol. Regul. Integr. Comp. Physiol. 296(4):R936-43. doi:
10.1152/ajpregu.90771.2008. PMCID:
PMC2698604. |
244. |
Parish, D., J. Benach, G. Liu, K. K. Singarapu, R. Xiao, T. Acton, M. Su, S. Bansal, J.H. Prestegard, J. Hunt,
G. Montelione, and T. Szyperski. 2008 Protein chaperones Q8ZP25_SALTY from Salmonella typhimurium
and HYAE_ECOLI from Escherichia coli exhibit thioredoxin-like structures despite lack of canonical
thioredoxin active site sequence motif. J. Struct. Funct. Genomics 9(1-4):41-49. doi:
10.1007/s10969-008-9050-y. |
243. |
Zheng, S., G. Kaur, H. Wang, M. Li, M. Macnaughtan, X. Yang, S. Reid, J.H. Prestegard, B. Wang, and H. Ke.
2008 Design, synthesis, and structure-activity relationship, molecular modeling and NMR studies of a series
of phenyl alkyl ketones as highly potent and selective phosphodiesterase-4 inhibitors. J. Med. Chem.
51(24):7673-7688. doi: 10.1021/jm701635j. |
242. |
Macnaughton, M.A., F. Tian, S. Liu, L. Meng, S. Park, P. Azadi, K.W. Moremen, and J.H. Prestegard. 2008
13C-sialic acid labeling of glycans on glycoproteins using ST6Gal-1. J. Am. Chem. Soc.
130(36):11864-11865. doi: 10.1021/ja804614w. PMCID:
PMC2640832. |
241. |
Beel, A.J.; C.K. Mobley, H.J. Kim, F. Tian, A. Hadziselimovic, B. Jap, J.H. Prestegard, and C.R. Sanders.
2008 Structural studies of the transmembrane C-terminal domain of the amyloid precursor protein (APP): does
APP function as a cholesterol sensor? Biochemistry 47(36): 9428-9446. doi:
10.1021/bi800993c. PMCID:
PMC2572687. |
240. |
Liu, Y., and J. H. Prestegard. 2008 Direct measurement of dipole-dipole/CSA cross-correlated relaxation
by a constant-time experiment. J. Magn. Reson. 193(1):23-31. doi:
10.1016/j.jmr.2008.03.013. PMCID:
PMC2542487. |
239. |
Zhuang, T., H-S Lee, B. Imperiali, and J. H. Prestegard. 2008 Structure determination of a
Galectin-3-carbohydrate complex using paramagnetism-based NMR constraints. Protein Sci. 17(7):1220-1231.
doi: 10.1110/ps.034561.108. PMCID:
PMC2442008. |
238. |
Wang, X., T. Weldeghorghis, G. Zhang, B. Imperiali, and J. H. Prestegard. 2008 Solution structure of Alg13:
the sugar donor subunit of a yeast N-acetylglucosamine transferase. Structure 16(6):965-975.
doi: 10.1016/j.str.2008.03.010. PMCID:
PMC2486831. |
237. |
Wang, X., S. Bansal, M. Jiang and J.H. Prestegard. 2008 RDC-assisted modeling of symmetric protein
homo-oligomers. Protein Sci. 17(5): 899-907. doi:
10.1110/ps.073395108. PMCID:
PMC2327283. |
236. |
Bansal, S., X. Miao, M.W.W. Adams, J.H. Prestegard and H. Valafar. 2008 Rapid classification of protein
structure models using unassigned backbone RDCs and probability density profile analysis (PDPA). J. Magn. Reson.
192(1):60-68. doi: 10.1016/j.jmr.2008.01.014. PMCID:
PMC2699457. |
235. |
Bryson, M., F. Tian, J.H. Prestegard and H.Valafar. 2008 REDCRAFT: A tool for simultaneous characterization
of protein backbone structure and motion from RDC data. J. Magn. Reson. 191(2):322-334. doi:
10.1016/j.jmr.2008.01.007. PMCID:
PMC2728087. |
234. |
Yu, F., J. J. Wolff, I. J. Amster, and J. H. Prestegard. 2007 Conformational preferences of chondroitin sulfate
oligomers using partially oriented NMR spectroscopy of 13C-labeled acetyl groups. J. Am. Chem. Soc.
129(43):13288-13297. doi: 10.1021/ja075272h. |
233. |
Wang, X., S. Srisailam, A. A. Yee, A. Lemak, C. Arrowsmith, J. H. Prestegard, and F. Tian. 2007 Domain-domain
motions in proteins from time-modulated pseudocontact shifts. J. Biomol. NMR 39(1):53-61. doi:
10.1007/s10858-007-9174-6. |
232. |
Sahu, S. C., V. Simplaceanu, Q. Gong, N. T. Ho, F. Tian, J. H. Prestegard, and Chien Ho. 2007 Insights
into the solution structure of human deoxyhemoglobin in the absence and presence of an allosteric effector.
Biochemistry 46(35):9973-9980. doi: 10.1021/bi700935z.
PMCID: PMC2532491. |
231. |
Feng, L., H.-S. Lee, and J.H. Prestegard. 2007 NMR resonance assignments for sparsely 15N labeled
proteins. J. Biomol. NMR 38(3):213-219. doi:
10.1007/s10858-007-9159-5. |
230. |
Seidel III, R.D., T. Zhuang, and J.H. Prestegard. 2007 Bound-state residual dipolar couplings for rapidly
exchanging ligands of His-tagged proteins. J. Am. Chem. Soc. 129(15):4834-4839. doi:
10.1021/ja069145h. PMCID:
PMC2542485. |
229. |
Liu, S., A. Venot, L. Meng, F. Tian, K.W. Moremen, G.-J. Boons, and J.H. Prestegard. 2007 Spin-labeled analogs
of CMP-NeuAc as NMR probes of the α-2,6-sialyltransferase ST6Gal I. Chem. Biol. 14(4):409-418.
doi: 10.1016/j.chembiol.2007.02.010. |
228. |
Macnaughtan, M.A., M. Kamar, G. Alvarez-Manilla, A. Venot, J. Glushka, J.M. Pierce, and J.H. Prestegard. 2007
NMR Structural characterization of substrates bound to N-acetylglucosaminyltransferase V. J. Mol. Biol.
366(4): 1266-1281. doi: 10.1016/j.jmb.2006.12.015. PMCID:
PMC1808497. |
227. |
Wang, X., H-S Lee, F.J. Sugar, F.E. Jenney, Jr., M.W.W. Adams, and J. H. Prestegard. 2007 PF0610, a novel winged
helix-turn-helix variant possessing a rubredoxin-like Zn ribbon motif from the hyperthermophilic archaeon, Pyrococcus
furiousus. Biochemistry 46(3):752-761. doi:
10.1021/bi061870h. |
226. |
Feng, L., R. Orlando, and J.H. Prestegard. 2006 Amide proton back-exchange in deuterated peptides: applications
to MS and NMR analyses. Anal. Chem. 78(19):6885-6892. doi:
10.1021/ac060948x. |
225. |
Sahu, S.C., V. Simplaceanu, Q. Gong, N.T. Ho, J.N. Glushka, J.H. Prestegard, and C. Ho. 2006 Orientation of
deoxyhemoglobin at high magnetic fields: structural insights from RDCs in solution. J. Am. Chem. Soc.
128(19):6290-6291. doi: 10.1021/ja060023z. |
224. |
Yu, F. and J.H. Prestegard. 2006 Structural monitoring of oligosaccharides through 13C enrichment
and NMR observation of acetyl groups. Biophys. J. 91(5):1952-1959. doi:
10.1529/biophysj.105.079913. PMCID:
PMC1544292. |
223. |
Zhuang, T., H. Leffler, and J.H. Prestegard. 2006 Enhancement of bound-state residual dipolar couplings:
conformational analysis of lactose bound to Galectin-3. Protein Sci. 15(7):1780-1790. doi:
10.1110/ps.051994306. PMCID:
PMC2242564. |
222. |
Mayer, K.L., Y. Qu, S. Bansal, P.D. LeBlond, F.E. Jenney, Jr., P.S. Brereton, M.W.W. Adams, Y. Xu, and
J.H. Prestegard. 2006 Structure determination of a new protein from backbone-centered NMR data and
NMR-assisted structure prediction. Proteins 65(2):480-489. doi:
10.1002/prot.21119. |
221. |
Prestegard, J. H., and Xiaobing Yi. 2006 Structure and dynamics of carbohydrates using residual dipolar
couplings in: NMR Spectroscopy and Computer Modeling of Carbohydrates (Vliegenthrt and Woods, Eds.), ACS Symposium
Series 930:40-59. |
220. |
Kishore, A.I., M.R. Mayer, and J.H. Prestegard. 2005 Partial 13C isotopic enrichment of nucleoside
monophosphates: useful reporters for NMR structural studies. Nucleic Acids Res. 33(18): e164. doi:
10.1093/nar/gni165. PMCID:
PMC1270954. |
219. |
Macnaughtan, M.A., A.M. Kane, J.H. Prestegard. 2005 Mass spectrometry assisted assignment of NMR resonances
in reductively 13C-methylated proteins. J. Am. Chem. Soc. 127(50):17626-17627. doi:
10.1021/ja056977r. PMCID:
PMC1847388. |
218. |
Valafar, H., K.L. Mayer, C.M. Bougault, P.D. LeBlond, F.E. Jenner, Jr., P.S. Brereton, M.W.W. Adams, and
J.H. Prestegard. 2005 Backbone solution structures of proteins using residual dipolar couplings: application
to a novel structural genomics target. J. Struct. Funct. Genomics 5(4): 241-254. doi:
10.1007/s10969-004-4899-x. PMCID:
PMC1815388. |
217. |
Wang, J., H. Valafar and J.H. Prestegard. 2005 Assessment of protein alignment using 1H-1H
residual dipolar coupling measurements. J. Magn. Reson. 172(1):85-90. doi:
10.1016/j.jmr.2004.03.012. |
216. |
Prestegard, J.H., K. Mayer, H. Valafar, and G. Benison. 2005 Determination of protein backbone structures
from residual dipolar couplings. In: NMR of Biological Macromolecules, Part C: Methods in Enzymology, Vol. 394,
pp. 175+. Elsevier Academic Press. doi:
10.1016/S0076-6879(05)94007-X PMCID:
PMC1808351. |
215. |
Feng, L., R. Orlando, and J.H. Prestegard. 2004 Mass spectrometry assisted assignment of NMR resonances in
15N labeled proteins. J. Am. Chem. Soc. 126(44):14377-14379. doi:
10.1021/ja0457664. |
214. |
Yi, X., A. Venot, J. Glushka, and J.H. Prestegard. 2004 Glycosidic torsional motions in a bicelle-associated
disaccharide from residual dipolar couplings. J. Am. Chem. Soc. 126(42):13636-13638. doi:
10.1021/ja045697t. |
213. |
Seidel III, R. D., J.C. Amor, R.A. Kahn, and J.H. Prestegard. 2004 Structural perturbations in human ADP
ribosylation factor-1 accompanying the binding of phosphatidylinositides. Biochemistry 43(49):15393-15403.
doi: 10.1021/bi0490385. |
212. |
Jain, N.U., T.J.O. Wyckoff, C.R.H. Raetz, and J.H. Prestegard. 2004 Rapid analysis of large protein-protein
complexes using NMR-derived orientational constraints: the 95 Kda complex of LpxA with acyl carrier protein.
J. Mol. Biol. 343(5):1379-1389. doi:
10.1016/j.jmb.2004.08.103 |
211. |
Seidel III, R.D., J.C. Amor, R.A. Kahn, and J.H. Prestegard. 2004 Conformational changes in human Arf1 on
nucleotide exchange and deletion of membrane-binding elements. J. Biol. Chem. 279(46):48307-48318.
doi: 10.1074/jbc.M402109200. |
210. |
Prestegard, J.H., C.M. Bougault, and A.I. Kishore. 2004 Residual dipolar couplings in structure determination
of biomolecules. Chem. Rev. 104(8):3519-3540. doi:
10.1021/cr030419i. |
209. |
Erbel, P.J.A., R. Seidel, S.E. Macintosh, L.N. Gentile, J.C. Amor, R. Kahn, J.H. Prestegard, L.P. McIntosh, and
K.A. Gardner. 2004 Cyclic enterobacterial common antigen: potential contaminant of bacterially-expressed
protein preparations. J. Biomol. NMR 29(2):199-204. doi:
10.1023/B:JNMR.0000019252.65073.24. |
208. |
Valafar, H., and J.H. Prestegard. 2004 REDCAT: a residual dipolar coupling analysis tool.
J. Magn. Reson. 167(2):228-241. doi:
10.1016/j.jmr.2003.12.012. |
207. |
Morris, L.C., H. Valafar, and J.H. Prestegard. 2004 Assignment of protein backbone resonances using
connectivity, torsion angles and 13Cα chemical shifts. J. Biomol. NMR 29(1):1-9.
doi: 10.1023/B:JNMR.0000019500.76436.31. |
206. |
Bougault, C., L. Feng, J. Glushka, E. Kupce, and J.H. Prestegard. 2004 Quantitation of rapid proton-deuteron
amide exchange using Hadamard spectroscopy. J. Biomol. NMR 28(4):385-390. doi:
10.1023/B:JNMR.0000015406.66725.30. |
205. |
Kishore, A. I., and J. H. Prestegard. 2003 Molecular orientation and conformation of phosphatidylinositides
in membrane mimetics using variable angle sample spinning (VASS) NMR. Biophys. J. 85(6):3848-3857. doi:
10.1016/S0006-3495(03)74799-7. PMCID:
PMC1303686. |
204. |
Valafar, H., and J.H. Prestegard. 2003 Rapid classification of a protein fold family using a statistical
analysis of dipolar couplings. Bioinformatics 19(12):1549-1555. doi:
10.1093/bioinformatics/btg201. |
203. |
Bougault, C.M., M.K. Eidsness, and J.H. Prestegard. 2003 Hydrogen bonds in rubredoxins from mesophilic and
hyperthermophilic organisms. Biochemistry 42(15):4357-4372. doi:
10.1021/bi027264d. |
202. |
Umemoto, K., H. Leffler, A. Venot, H. Valafar, and J. H. Prestegard. 2003 Conformational differences in
liganded and unliganded states of Galectin-3. Biochemistry 42(13):3688-3695. doi:
10.1021/bi026671m. |
201. |
Glushka, J.N., M. Terrell, W.S. York, M.A. O'Neill, A. Gucwa, A.G. Darvill, P. Albersheim, and J.H. Prestegard.
2003 Primary structure of the 2-O-methyl-α-L-fucose-containing side chain of the pectic polysaccharide
rhamnogalacturonan II. Carbohydr. Res. 338(4):341-352. doi:
10.1016/S0008-6215(02)00461-5. |
200. |
Jain, N.U., S. Noble, and J.H. Prestegard. 2003 Structural characterization of a mannose- binding
protein-trimannoside complex using residual dipolar couplings. J. Mol. Biol. 328(2):451-462. doi:
10.1016/S0022-2836(03)00268-7. |
199. |
Adams, M.W.W., H.A. Dailey, L.J. DeLucas, M.Luo, J.H. Prestegard, J.P. Rose, and B.C. Wang. 2003
The southeast collaboratory for structural genomics: a high-throughput gene to structure factory.
Acc. Chem. Res. 36(3):191-198. doi:
10.1021/ar0101382. |
198. |
Siriwardena, A.H., F. Tian, S. Noble, and J.H. Prestegard. 2002 A straightforward NMR-spectroscopy-based
method for rapid library screening. Angew. Chem. Int. Ed. Engl. 41(18):3454-3457. doi:
10.1002/1521-3773(20020916)41:18<3454::AID-ANIE3454>3.0.CO;2-L. |
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Update in progress: Tuesday January 19, 2010
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